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Monday, Apr 15, 5:00 PM +03 · 1 hour

Incorporating structural features of proteins into molecular modeling

April 15, 2019 at 05:00:00 PM · Istanbul
By BioInfoNet (4.8 stars · 5 reviews )
About This Webinar

Homology modeling and coarse-grained molecular dynamics studies

In this lecture difficulties inherited from protein structure prediction techniques will be discussed for ligand gated ion channels along with enhanced molecular dynamics simulations (MD) and normal mode analysis.The accuracy of comparative models derived from homologous proteins in the low sequence similarity range is limited substantially by inaccuracies in the alignment. In spite of recent advances in profile-profile, profile-sequence, and other alignment methods, the accuracy of the alignments remains a primary factor in the accuracy of the final model. In this lecture various different alternative techniques based on iterative approaches of model building and model assesment will be discussed along with standard protein structure modeling techniques. Additionally, molecular dynamics of NMDA type tetrameric and nicotinic acetyl choline type pentameric ion channel proteins will be discussed to illustrate the current status of all-atom molecular dynamics studies.

Who can view: Everyone
Webinar Price: Free
Webinar ID: 589aad3fd43b
Featured Presenters
Webinar hosting presenter ISCB SC RSG Turkey
ISCB RSG Turkey Crew
Webinar hosting presenter
Prior to joining the faculty at Kadir Has University, Sebnem Essiz held post-doctoral scholar positions at Lawrence Livermore National Lab and Prof. Andrej Sali’s Lab at Univ. of California, San Francisco. She received her PhD in Chemistry from...
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BioInfoNet webinar platform hosts Incorporating structural features of proteins into molecular modeling
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BioinfoNet is an online community for online bioinformatics meetings initiated by ISCB SC RSG Turkey. This meetings include free webinars and paper clubs.
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